PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_26AC51E52.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 247aa    MW: 26395.9 Da    PI: 6.3659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_26AC51E52.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-1167128454
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54 
                            ++  rE+ RRd++N++f eL +++ +              +++ Kl+Ka+iL  A++ + +L
  Traes_6AS_26AC51E52.1  67 SKACREKMRRDKLNDRFLELCSVMNSgKHsgleecsasnPGKNAKLDKASILSDATRMLTQL 128
                            6789**********************6559***************************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1157143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.4963128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-766133No hitNo description
PfamPF000101.6E-867128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1268150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-769134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MMDGGVGVGD PVEDFLIGGA GDGGEGLAAF CDGGLGIEDV SGGDSGLGHS NLGKRARDEP  60
SSSGPKSKAC REKMRRDKLN DRFLELCSVM NSGKHSGLEE CSASNPGKNA KLDKASILSD  120
ATRMLTQLRG ETEKLKESNS NLRETIKDLK VEKNELRDEK LSLKAEKERL EQQLKAASAA  180
PTGFAPHMPY PAAFHPAVYP PFAPPYQVPA NKGAPVPAAF PGMAMWHWLP PTAMDTTQDP  240
KLWPPNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691720.0AK369172.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2086D01.
GenBankAK3702300.0AK370230.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107F07.
GenBankAK3735130.0AK373513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3033I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573308.11e-122PREDICTED: transcription factor ILR3-like
TrEMBLW5GCF40.0W5GCF4_WHEAT; Uncharacterized protein
STRINGMLOC_74170.11e-152(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-54bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]